vetmax7

I resolved the error by using ` --config_preset "model_1"` instead of `model_1_ptm`. However now I have pdb where the coordinates of amino acids are calculated incorrectly. I use "manual optimization...

So, I've found a way how to convert *ckpt to my own *npz model. First, in [train_openfold.py](https://github.com/aqlaboratory/openfold/blob/main/train_openfold.py) I added: `def convert_to_pt(ckpt_path, output_path): checkpoint = torch.load(ckpt_path) model_state_dict = checkpoint['state_dict'] adjusted_state_dict =...

Hello! Could you find solutions?

Hello! I' ve got such error `RuntimeError: Error(s) in loading state_dict for AlphaFold: Missing key(s) in state_dict: "aux_heads.tm.linear.weight", "aux_heads.tm.linear.bias".` when I tried to use my own checkpoint after train OpenFold....

Hello @liuxm117 and all! Can you explain please, how did you use your `*.ckpt ` files for for prediction? Which script did you use for test with ckpt files? In...

@gahdritz @liuxm117 Can you explain please, how did you use your *.ckpt files for for prediction as a model? Or how can I convert it to *.npz? If I try...

@C-de-Furina Hello! Could you explain how did you use the checkpoint? As a extra tuning `--openfold_checkpoint_path checkpoint.ckpt` for alphafold model_1 (for example) or a model itself?

> > @C-de-Furina Hello! > > Could you explain how did you use the checkpoint? As a extra tuning for alphafold model_1 (for example) or a model itself?`--openfold_checkpoint_path checkpoint.ckpt` >...

Ok, thanks!

@Melo-1017 Hello! Have you found a solution of your problem? How did you generate alignments for "`Using precomputed alignments for at1 at ./alignments...`"? By `run_pretrained_openfold.py `or not?