Ted Verhey

icon indicating a website link https://www.linkedin.com/in/verheytb icon indicating an email [email protected]

icon company University of Calgary icon location Calgary, Alberta, Canada icon location Senior Computational Biologist working on brain tumors and sarcomas. I develop methods for unsupervised deconvolution and integration of (multi-)omics data.

Results 3 comments of Ted Verhey

Writing r+ backed adata causes error in raw

I got this issue as well. It seems to be that saving a "r+" backed file results in corrupting/deleting the raw data, so that when you open it again and...

Writing r+ backed adata causes error in raw

Interestingly, in the previous example code, when you load `c` into memory and then write, there are no errors. ```py import anndata as ad from scipy import sparse a =...

Parsnp: Error creating Gingr input file

I'm not exactly sure why, but we thought it might have to do with trying to use a collection of 600 genomes and contigs. So, we narrowed down the list...