vegetableyu

Hi， i am using svim2.0.0 and encountered an err: [ERROR ] '

Run SVision on a pseudo-chromosome

1

Hi there, I am focusing on a specific region of the genome, so I extracted this region from the .fa file as a pseudo chromosome and got the alignment results...

ExtractHLAread.sh

5

Hi, When I apply the ExtractHLAread.sh script, the unpaired reads produced are far more than the paired reads. After researching, I saw that some people say the bam file should...

Hi there, I encountered an installation error, algo.hpp does not have ”viewRecords“ function, how can I get this function? The error message is： LRcaller/algo.hpp:1126:13: error: ‘viewRecords’ was not declared in...

Can PANPOP be used to combine individual VCF results?

4

郑博士您好， 请问我call出每个样本各自的vcf后，PANPOP有合并所有个体的vcf得到最终合并的vcf的功能吗？ 祝好

Hi there, When running bam2cov, I want to use the `--runBiasDetection` parameter. May I ask if it's necessary to use the `biasAnnotationsBedArrayToBeProjected` file provided by you? Additionally, I am not...

Hi there, I followed the steps outlined here https://github.com/mobinasri/flagger/tree/main/test_wdls/toil_on_slurm#running-hmm_flagger_end_to_end_with_mappingwdl-on-test-datasets for running hmm_flagger_end_to_end_with_mapping.wdl on test datasets, where Docker is invoked by default. I have already pulled several Singularity images: bio_base_latest.sif, flagger-v1.2.0.sif,...