vegetableyu

Hi shuai, I looked at samtools fastq --help, which also says it needs to be sorted by reads name. However, using samtools fastq for bam files sorted by reads name...

Hi shuai, Thanks for your reply and suggestions, i will check this later. I noticed that others were also discussing the issue of preprocessing and gave some suggestions. This might...

> 当然。您可以试试`PART_run.pl` https://github.com/starskyzheng/panpop?tab=readme-ov-file#s_example 请问执行perl panpop/bin/PART_run.pl --in_vcf INPUT.vcf -o OUTDIR_RUN1 -r REFERENCE.FASTA -t 16 --tmpdir TMPDIR命令时输入的INPUT.vcf是所有样本合并后的vcf吗？请问这个vcf如何得到呢？