user-tq

使用xshell时，vi编辑器滚动鼠标可以超出上边界，可以方便地复制命令行至剪切板，然后粘贴到vi编辑器打开的文本中 windterm没法滚动鼠标超出上边界，不知道有没有什么使用技巧

expand Clinical biomarkers

3

This is an amazing project. I learned a lot from it. I noticed this ``` Clinical biomarkers included in PCGR are limited to the following: Evidence items for specific markers...

The best solution for one-to-one correspondence between genes and transcripts

3

Thank you for developing this awsome tool. I would like to know what is the best practice for selecting a unique transcript based on vep2maf. I am in a clinical...

how use vm tag in secondary loop table

4

In the two-tier loop, vmtag doesn't seem to work as I expected. is there anyway to do this? ``` from docxtpl import DocxTemplate tpl = DocxTemplate('templates/vertical_merge_vm_loop2.docx') tpl.render( {"allinfo": [ {...

precision the CN to decimal and annotate the area where the copy occurs

1

 I'm trying to reproduce the result of a comparison， which is its standard answer. I use the following command line （The only original files I get are fastq and...

Pisces has different dp and no call？

1

I'm learning the somatic mutation process, Out of curiosity, I compared the results of muect2 and Pisces, and I found that there would be a great depth difference between them....

Actually,not retain only the highest expressed gene

1

[The tutorial ](https://omicverse.readthedocs.io/en/latest/Tutorials-bulk/t_deseq2/) indicates that:"We notes that the gene_name mapping before exist some duplicates, we will process the duplicate indexes to retain only the highest expressed genes" but in the...

I used delly and sansa to build a structural variation analysis pipeline and attempted to evaluate its accuracy through NCCL validation data. Delly detected the expected mutation. But I'm a...

ifl9 沪深加权能有吗

1

在setting里加了个nf_IFL9显示不支持 沪深加权好像只有软件能看？ 不懂期货这些 最近看到有大佬说有这个沪深基差指标，所以想看看

i know the [Transfer FILTER values into an INFO tag](https://samtools.github.io/bcftools/howtos/annotate.html) ``` bcftools annotate -c INFO/NewTag:=FILTER B.bcf ``` but i want ``` bcftools annotate -c INFO/raw_pos:=%CHROM-%POS-%REF-%ALT clinvar_20240902.vcf.gz # it not work...