transcriptomics topic
rna-seq-pop
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
glmmSeq
Gene-level general linear mixed model
SCPA
R package for pathway analysis in scRNA-seq data
cellenium
Cellenium is a FAIR and scalable interactive visual analytics app for scRNA-Seq data (single-cell RNA sequencing).
paccmann_rl
Code pipeline for the PaccMann^RL in iScience: https://www.cell.com/iscience/fulltext/S2589-0042(21)00237-6
enrich_omics
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
sandy
A straightforward and complete next-generation sequencing read simulator
isotools
IsoTools is a python module for Long Read Transcriptome Sequencing (LRTS) analysis.
DEcode
A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions
zarp
The Zavolab Automated RNA-seq Pipeline