transcriptomics topic
DTUrtle
Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:
openst
Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
Omics
CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
pyMultiOmics
Python toolbox for multi-omics data mapping and analysis
Pando
Multiome GRN inference.
celltalker
Inference of cell-cell communication from single-cell RNAseq data
scasa
SCASA: Single cell transcript quantification tool
stabilized-ica
This repository proposes a python implementation of a stabilized ICA algorithm
scrattch
Single cell RNA-seq analysis for transcriptomic type characterization
cellDancer
Predict RNA velocity through deep learning