transcriptomics topic

Bring your single-cell data to life

lilab-bcb

From geospatial to spatial -omics

pachterlab

A tool for projecting genomic alignments to transcriptomic coordinates

OceanGenomics

This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.

bpucker

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

owkin

Transcriptomics Visualization R package.

benben-miao

ClusterMap for multi-scale clustering analysis of spatial gene expression

wanglab-broad

The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)

dohlee

Single cell interactive plotting tools

klarman-cell-observatory

UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference

StatBiomed