Thomas Sandmann
Thomas Sandmann
I am not sure if this has been noted elsewhere, but it would be great to add a `comment` argument to the `read_excel` family of functions. Similar to `readr::read_delim`, which...
**tl;dr**: 3-tag sequencing methods for bulk RNA samples contain known sample indices and UMIs and thus resembles sc-RNA-seq read formats. Do you have a recommendation on how to use Salmon...
In [3.5-classifying-movie-reviews.ipynb ](https://github.com/fchollet/deep-learning-with-python-notebooks/blob/master/3.5-classifying-movie-reviews.ipynb), code block 36, the following line produces an error: ```python epochs = range(1, len(acc) + 1) ``` because `acc` is not defined. I think it should be...
I am wondering if it is possible to suppress building the search index? It takes quite a bit of time (because I have beefy vignettes). According to [the manual](https://pkgdown.r-lib.org/articles/search.html) individual...
I am using AWS SSO with temporary credentials, and need to switch between different roles. Perhaps that's worth supporting, e.g. via a `--profile` argument?
This is a great CLI tool - and it could be even better if it also supported - stopping a running EC2 instance - restarting a stopped EC2 instance Many...
It seems that the description of the color legend for the Dependency Network might be mixed up. For example, here is a screenshot after running `CreatePackageReport("devtools")`: The `devtools` node is...
I think the `pin_versions_prune` function is removing the youngest, not the oldest versions of a pin when versions are written in rapid succession (e.g. < 1 minute). The following is...
https://github.com/lianos/multiGSEA/blob/19006d1053db8de807b80faa2a967a49d0b2ab38/R/get-reactome.R#L15 It looks like the `id.col` is not used, e.g. specifying `ensembl` as the desired featureType doesn't have an effect?
The `getPantherGeneSetDb` function throws an error when I try to reproduce the example provided in the vignette. No object is returned: ```r library(multiGSEA) goslimdb