Tali Mazor

Similar to other recent issues around improving patient view when one more more samples are not profiled, we should add a message on genomic evolution when samples don't have mutation...

improve patient page with multiple samples and one is not profiled

2

This is a patient with 2 samples. One sample is profiled for Mut & CNA, while the other sample has not been profiled. https://www.cbioportal.org/patient/summary?studyId=mpcproject_broad_2021&caseId=MPCPROJECT_0013  In #9708 I asked that...

I love the enhancement added in https://github.com/cBioPortal/cbioportal-frontend/pull/4867 But I think the wording can be made slightly clearer - below is my proposed text update. Current text: The SAMPLE ID's below...

Based on this user conversation: https://groups.google.com/g/cbioportal/c/OHaNCCqfuIM Include a reference to the gene synonyms: https://github.com/cBioPortal/datahub-study-curation-tools/blob/master/gene-table-update/build-input-for-importer/gene_info.txt And this information about which mutations are filtered out during import: Additional filters are applied to...

comparison/mutations tab fails to load if mutations are not selected on genomic alterations tab

1

If I de-select Mutations on the Genomic Alterations tab, and then click over to the Mutations tab, the page fails to load and I get this error: {"type":"ErrorBoundary","log":"TypeError: Cannot read...

Add gene-level charts to study view for categorical molecular profiles

9

**Background**: * cBioPortal: [cBioPortal](https://github.com/cBioPortal/GSoC/issues/www.cbioportal.org) is an open-source platform for cancer genomics data analysis and visualization. It provides a centralized resource for exploring and analyzing large-scale cancer genomic data sets, including...

study view clinical data tab doesn't load for large studies

1

User reported: https://groups.google.com/g/cbioportal/c/gHD8klsUf5M No data loads when clicking over to the Clinical Data tab on Study View for GENIE  https://genie.cbioportal.org/study/clinicalData?id=genie_public Trying to download the clinical data also fails.

data type + reference genome filter on homepage does not work with virtual studies

1

If I apply the data type filter, it does not work with virtual studies -- eg if I create a virtual study from a study with mutation data, then apply...

virtual study creation description bug

1

I applied a filter, clicked to save the virtual study and the description is populating with "0 sample from 0 study:" which is wrong

update homepage headers & footers and add contact page

3

https://docs.google.com/presentation/d/1yD6TrHLkKVpILs2nueXct8S-NkGaG4DvhCKru6jGfvk/edit#slide=id.g1f7b5a26760_0_4 Update headers Add icons to footer Add Contact page