Tali Mazor
Tali Mazor
Maybe this is just a future phase of generic assay implementation that we haven't gotten to yet, but generic assay data isn't visible anywhere on the patient/sample pages. Let's add...
I kinda thought we used to have one, but I'm not seeing it anymore. Regardless, the filter icon that filters the gene charts in study view to only cancer genes...
As best I can tell, when I load a study for the filter time, the cancer genes filter on the genes tables is off, so all tables show all genes....
p-value in KM chart is 0.00 but should be
GENIE is showing 100% of samples with fusion data, but I know that's not true.  In speaking with @Luke-Sikina this sounds like it may be a code problem and...
Some TCGA studies have called TERT promoter mutation but we don't have that data in cBioPortal. This is likely because the mutations may not come from the standard exome sequencing...
Not sure if this is a data or code bug... METABRIC study view shows 100% of samples with Mutations. But if I run a query, eg ESR1, all samples are...
user reported: https://groups.google.com/g/cbioportal/c/fzBbU7pkSfQ User queried CDH1 in all curated non-redundant studies and found some confusing results in terms of the number of samples with 'Bladder Urothelial Carcinoma' when viewing the...
User reported: https://groups.google.com/u/1/g/cbioportal/c/T-QlXI66WRU Querying for TERT:DRIVER in GENIE can result in an alteration frequency >100% (see Desmoplastic Melanoma here: https://genie.cbioportal.org/results/cancerTypesSummary?Action=Submit&RPPA_SCORE_THRESHOLD=2.0&Z_SCORE_THRESHOLD=2.0&cancer_study_list=5fa03921e4b0242bd5d29486%2C5fa036d9e4b015b63e9c7076&case_set_id=all&data_priority=0&gene_list=TERT%253A%2520DRIVER&geneset_list=%20&profileFilter=0&tab_index=tab_visualize) The reason is that TERT mutations are called in samples...
It sounds like we are currently using raw beta values from the array probe that is most negatively correlated with expression. For comparison, the mRNA expression data that we provide...