tkcaccia
tkcaccia
I retrieving the Visium spot from a mask. I found the procedure a little bit slow. Is it possible to parallelize the following code? ``` # Determine which spots are...
I ran with not problem the ancestry pipeline. I have an issue with the somatic mutation pipeline. I met an error in the cellScan module ``` (base) user@user-System-Product-Name:~$ python ${path}/src/Monopogen.py...
ANSI escape codes shown instead of colored output in Nextflow 24.10.0 when running nf-core/rnafusion
Describe the bug While running the nf-core/rnafusion pipeline with Nextflow v24.10.0, I suddenly started seeing raw ANSI escape sequences (^[[1m, ^[[33m, etc.) in the terminal or log output instead of...
There are issues with the new version. The package cannot link to the library libgit2 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ``` Configuration failed to find libgit2 library. Try installing: * brew: libgit2 (MacOS) *...
### Issue Description warning message with the function SCTransform ### Reproducing Code Example ```R pancreas.sel
I am working on matrix big as 65536*65536 (basically containing 2^32 value). I am using your function directly using Rcpp. Unfortunately irlb function cannot deal with function so big. Is...
My package requires the headers provided by the irlba package for C code, and I am receiving this NOTE ('LinkingTo' for ‘irlba’ is unused as it has no 'include' directory),...
Is it possible to run fusioncatcher on gencode human reference or using a human reference previously downloaded?
Can you please include a pipeline with Admixture analysis?
### Description of the bug Due to memory limitations, I had to resume the pipeline multiple times. Each time, the execution restarts from the process NFCORE_MAG:MAG:BINNING:COMEBIN_RUNCOMEBIN because of the recurring...