Tinyi Chu

Thank you for your interest in our method. To answer your questions: 1) I have not tested cross species deconvolution. I usually would not recommend this strategy, unless the marker...

Thank you for your interest in our work. In theory, users can use as few as only one bulk sample. Results from the first (initial) Gibbs sampling will remain the...

Hi Mi, To answer your question: In general, what do you think about running BayesPrism a few times with different seeds, and then average the result ? It is not...

Hi Mi, As mentioned in the previous thread. P value is a frequentist concept, and the proposed strategy does not correspond to an interpretable null distribution. cv is used to...

Hi Peng, Sorry that BayesPrism does not output all posterior samples for now, as this would be very memory consuming. If you would like to estimate the posterior variance, you...

Hi Mi, This is an interesting idea. Here are my thoughts: 1) there are already many mature cell typing methods specifically developed for scRNA-seq, either deep learning-based methods (for label...

Hi Paula, Thank you for your interest in our methods. Do you mind sending me the input data that can reproduce the error to ***@***.*** ? You can dump everything...

Hi Paula, You only have one cell type. This will cause errors. The number of cell types should also be greater than 1, otherwise there is no need for deconvolution....

Looks like it is caused by the failure in the installation of the scran package. Could you try installing scran manually and see what the error is? Thanks. On Fri,...

Hi. I wasn’t quite sure I understand your question. Could you elaborate a bit? On Wed, Nov 29, 2023 at 19:10 biomart811 ***@***.***> wrote: > Hello, > I would like...