Tinyi Chu

thank you very much for catching that. It is fixed now. On Thu, Jul 6, 2023 at 10:13 AM Marine Leclercq ***@***.***> wrote: > Hi devs, > > I noticed...

Hi Federico, Yes. If a given cell type is similar among different tissues, one way of labeling the cell state is cell type X-tissue A, cell type X-tissue B, cell...

Thank you for your interest in our work. Unfortunately BayesPrism does not support microarray data, as it models count data. On Wed, Nov 2, 2022 at 6:58 AM Phoenix12580 ***@***.***>...

Hi. The bulk data from the tutorial is from TCGA-GBM. Could you elaborate on what you meant? Thanks. On Sun, May 28, 2023 at 11:07 AM Zhang Feifan ***@***.***> wrote:...

Dear User, Thank you very much for your suggestion. We will incorporate this feature in our next release. In the meantime, you may construct the reference profile by summing up...

Sorry for the delay. The new version v2.2 now supports input of dgMatrix as the input of scRNA-seq reference.

Yes. To only use cell type, simply specify cell.state.labels = the same input you provided for cell.type.labels. Theoretically speaking, the definition of cell states were developed to account for the...

Thank you for your interest in our work. cell.type.labels should be your target granularity of cell types, and has to be greater than one type. In your case, I believe...

same as cell type On Sat, Dec 3, 2022 at 6:10 AM venkan ***@***.***> wrote: > Thank you for your reply. I have cell type only Fibroblasts. > > If...

Looks good to me. But it appears to me that you are trying to deconvolve TGCA tumor sample with only fibroblasts scRNA reference? BayesPrism requires a complete representation of cell...