timghaly

Quality trimming reads?

2

Dear Plass team, I am very interested in using this tool for protein assembly of soil metagnomes. I am just curious if you would recommend to first quality filter and...

Only eukaryote reads are being classified with nr database

4

Hey kraken2 team, thanks for this tool. I am trying to classify reads using the nr database, but am finding ~99% of reads are unclassified, and only eukaryote hits (~1%)...

Profiling eukaryote contigs?

3

This looks like a great tool. I'm wondering though how well metabuli would perform classifying environmental mciroeukaryotes. Particularly, because it looks like that Prodigal is used to generate the databases,...

createnewtaxalist is not completing

4

Hi! Thanks for the development of this really cool tool! I am interested in adding eukaryote genomes to your prebuilt GTDB r220 database (https://metabuli.steineggerlab.workers.dev/gtdb+virus+human.tar.gz). However, the `createnewtaxalist` command is not...