thegrebe

SeqFu stats/qual mixed command?

1

Hi, Would it be possible to implement a single function that computes 1. number of read 2. read length distribution descriptors (Avg / Min / Max / Quantiles) 3. read...

Hello, Thanks for this useful package! I have some questions on what exactly is stored in the resulting `KEGG.db`, and how that relates to the options of `clusterProfiler::enrichKEGG`. `enrichKEGG` has...

mStat_generate_report_single(): error in linda() call

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`mStat_generate_report_single()` fails due invalid call to `linda()` in `MicrobiomeStat_1.1.3`: ``` processing file: file10828c3bf4e.Rmd |........................ | 78% [taxa-test-execution] Quitting from lines 615-626 [taxa-test-execution] (file10828c3bf4e.Rmd) Error in `linda()`: ! unused arguments (feature.sig.level...

Example "Inspecting Paired Samples: Taxa Analysis" results in GUniFrac error

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Hello, Thanks to the team for this package, the help/wiki is very straightforward, easy to follow and clear. I ran into an error trying to reproduce the tutorial "Paired Samples...

Hello, There is an unwanted interaction between `anno_barplot` parameters `axis_param = list(direction = "reverse")` and `add_numbers=TRUE`. Correct behavior: ``` set.seed(123) lt = list(a = sample(letters, 5), b = sample(letters, 10),...

Hi all, It seems adding numbers to a barplot messes with the ylim. Normal behavior: ``` set.seed(123) lt = list(a = sample(letters, 5), b = sample(letters, 10), c = sample(letters,...

After https://github.com/YuLab-SMU/enrichplot/issues/324

Hi there, Thanks for the very useful package! Not sure if this is a bug or a feature request, but here it is: the `fontsize` parameter from the `treeplot()` function...

Hello, I am trying to use MuSiC through conda environments. The latest available conda package for MuSiC corresponds to v0.2.0 ([see here](https://github.com/bioconda/bioconda-recipes/blob/master/recipes/r-music/meta.yaml)). I could not find proper release, archive or...

Hello, An issue not related to NMF, but I am posting here as a way to contact the author. You authored the R package `CellMix`, which seems to have disappeared...