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SeqFu stats/qual mixed command?

Open thegrebe opened this issue 3 years ago • 1 comments

Hi,

Would it be possible to implement a single function that computes

  1. number of read
  2. read length distribution descriptors (Avg / Min / Max / Quantiles)
  3. read quality descriptors (Avg / Min / Max / Quantiles)

Currently, 1. and 2. can be accessed with seqfu stats and 3. with qual, but this necessitates to read the file twice.

Thanks in advance

thegrebe avatar Apr 29 '22 15:04 thegrebe

Thanks for the feedback, I will experiment something in the future on this topic

telatin avatar May 17 '22 08:05 telatin

We close it for now, as it will take a while before we have the time to address this. Thanks again for your feedback

telatin avatar May 26 '23 07:05 telatin