Prasoon

icon indicating a website link https://www.img.cas.cz/en/ icon indicating an email [email protected]

icon company Institute of molecular genetics icon location Prague icon location PhD Bioinformatician pivoting to Data Science | ML & Biostatistics | Python • R • SQL | Data-Driven Problem Solver

Results 4 comments of Prasoon

Colors of plotAvgProf

Hi, I have two condition I want separate line type along with colour. I used this, plotAvgProf(gL1, xlim=c(-100, 100), xlab="Genomic Region (5'->3')", ylab = "Xlinks Count Frequency") + ggtitle ("3ss_brr2")...

Breaker2 parameters for non cannonical splice site

Hello @tomasbruna, Thank you very much. I am looking forward to hear from you soon. Meanwhile, I want to bring to your notice that I have tried to repeat the...

Breaker2 parameters for non cannonical splice site

Hi Tomas, Thanks a lot. Sure, I will let you know, if it works for me or any further question My Best Regards, Prasoon

Breaker2 parameters for non cannonical splice site

Hi Tomas, I have used following commands to run prothint and braker. ./prothint.py dj.masked.fa protein_merged.fasta --nonCanonicalSpliceSites --cleanup --workdir noncannonical ./braker.pl --genome=dj.masked.fa --species=dj2_nc3 --hints=prothint_augustus.gff --epmode –splice_sites=CAAC,GCAC,TTAC,GAAG,GACA,GTCA,GTGC,GTCG,GCCA,GCAG,GTAG Using prothint, I have obtained...