tfwillems

Should null values be counted as duplicates: Expected behavior for nullable=True and unique=True

4

#### Question about pandera Currently, if a *Field* is created with *unique=True* and *nullable=True*, the data frame will fail validation if > 1 null values is present in the column....

When the left portion of a read ends in a part of its haplotype that is an insertion relative to the reference genome, we currently soft clip the sequence when...

str_length check raises an DispatchError exception if min_value or max_value are not set

1

**Describe the bug** A clear and concise description of what the bug is. - [ ] I have checked that this issue has not already been reported. There are other...

For a BamAlignment generated using a BamMultiReader's GetNextAlignmentCore() function, running BuildCharData() doesn't populate the alignment's filename. Instead, the filename remains the empty string while all other string fields are correctly...

ALLREADS flag discrepancy

4

I believe there is a discrepancy between the ALLREADS format field and the GB format field in the VCF allelotyper output. The length differences reported by the two fields should...

Alternate allele length of zero

1

When an alternate allele has a length of 0 and there's only 1 alternate allele, the alternate allele field is printed in the VCF as the empty string. While this...

Wrong default value used when keyword used in multiple columns

6

**Describe the bug** If multiple columns have different values for `default`, which was recently added, `validate` does not use the correct value for each column. Instead, it appears to use...