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Correctly visualize unspanned insertions in left tails

Open tfwillems opened this issue 9 years ago • 0 comments

When the left portion of a read ends in a part of its haplotype that is an insertion relative to the reference genome, we currently soft clip the sequence when visualizing it. We should fix this issue by tinkering with SeqAlignment/AlignmentTraceback.cpp and the visualization code

tfwillems avatar Jun 26 '16 13:06 tfwillems