teryyoung

hello, I runned fgbio's FilterConsensusReads to my RNAseq data, but the output results files are of too little size. The raw read uBAM file had 3-4GB, after first mapping and...

ZipperBams failed. Error: processed all unmapped reads but there are mapped reads remaining to be read.

3

hello! I'm doing with sequencing data with UMI, I followed [#fgbio-best-practise-fastq---consensus-pipeline](https://github.com/fulcrumgenomics/fgbio/blob/3a74fd28ff630b417410953541ff107a1b7b0fb7/docs/best-practice-consensus-pipeline.md#fgbio-best-practise-fastq---consensus-pipeline) When I run fgbio ZipperBams to merge my consensus.ubam and consensus.mapped.bam, there is an exception: `Exception in thread "main"...

here is one row of my results, TxDb= TxDb.Hsapiens.UCSC.hg38.knownGene. seqnames | start | end | width | strand | annotation | geneChr | geneStart | geneEnd | geneLength | geneStrand...

My Peaks had 22122 rows, after I run annotatePeak() , is returns AnnotatedObj whith 22105 rows. Annotated peaks generated by ChIPseeker 22105/22112 peaks were annotated Genomic Annotation Summary: Feature Frequency...