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                                            teryyoung

entries of params were nan which will throw error in lstsq

the same problem here, hoping some solutions

ZipperBams failed. Error: processed all unmapped reads but there are mapped reads remaining to be read.

I used STAR to map the uBAM, so the code looks weird, 1)First I FastqtoBam the raw reads, and picard sorted it; `java -Xmx10g -jar /share/apps/softwares/fgbio/target/scala-2.13/fgbio-2.2.2-3a74fd2-SNAPSHOT.jar FastqToBam \` ` --input...

ZipperBams failed. Error: processed all unmapped reads but there are mapped reads remaining to be read.

Did you mean that '/A' is necessary for ZipperBams? And that should be retain whatever I run command on it? now I think my fault is misuse the STAR alignment.