szimmerman92

Error 20

10

Hi, When I run spades for a group of samples I keep on getting the following error mesages ======= SPAdes pipeline started. Log can be found here: /n/scratchlfs/buenrostro_lab/sam_rotation/assemblies/SRR5983368_ms_out/spades.log ===== Read...

question about optimizing foldseek for metagenomics gene catalogue

7

Hi, I have a little over 1 million proteins from a metagenome I would like to perform an easy-search on Alphafold/UniProt50. I am running foldseek on Google Cloud so I...

enhancement for RCTD function gather_results to increase speed.

4

Hello, Thank you for creating this amazing tool. I noticed that the gather_results function can be quite slow for my Xenium data. It has taken several days for samples that...

prefilter step died when running easy-search: Segmentation fault (core dumped)

6

## Expected Behavior easy-search should finish execution without errors ## Current Behavior Error during pre-filter step > Index table k-mer threshold: 0 at k-mer size 15 > Index table: counting...