Stefan Lang
Stefan Lang
Vartrix (https://github.com/10XGenomics/vartrix) is a tool to quantify single cell SNP data. As it is not available here I think it would be a good idea to get it. This should...
Please add the test files for the vartrix module. They are based on the 10x test files and even a howto on how to get these files is included. Hope...
# nf-core/scrnaseq feature request Hi nf-core/scrnaseq developer! I got interested in your very promising package and am trying to set it up on aurora - our HPC system in Lund....
I am trying to follow the tutorial https://squidpy.readthedocs.io/en/stable/external_tutorials/tutorial_tangram.html and am wondering of how to get the img object for a real live dataset. It would be great if there would...
## Description When following the squidpy tutorials plotting of tissue slides is using the scanpy package leading to figures that are cropped to the areas actually containing cells. If I...
Hi, with the help of Rob I managed to get a Rust BD Rhapsody analysis tool to work (https://github.com/stela2502/Rustody). It supports all versions of BD's beads at the moment, but...
Hi - thank you for this program - it does all the things I not even thought about! But can you please add the memuse to your dependencies? It is...
Hi and thank you for this tool! Our analysis server only supports Singularity, not Docker. Would it be a lot of work to use Singularity instead of Docker or as...
I have created u64 representations of a kmer like this: ``` for kmer in needletail::kmer::Kmers::new(seq, 32 as u8 ) { let km = Kmer::from(kmer).into_u64(); ``` Is there a function to...
Hi numbat developers. I am not very sure about the genomics part of the analysis here - actually I not even read your paper well enough. But I am really...