Stefan Lang
Stefan Lang
Just a question - is there a solution top this issue? Please link it here.
Yes, but that is not a solution, just a bug-fix. I hope the SNAP developer come up with a real solution.
A short follow up question - how can a generate_spot_crops fail with the error: "ValueError: Expected `height` to be in interval `[0, 1937]`, found `21035`." if a call to ```...
Hi Giovanni, Do you need something from me to help me with this question? Can you point me to any web page that could help me with that? I am...
Thank you for your input! I am sorry I had to create A issue to get this info. Could you possibly update the tutorials to also include this information? Might...
OK after having used both the scanpy and the squidpy plot functions I need to ask you - why does scanpy know how to crop the images and squidpy does...
Thank you. If the heuristic you use in scanpy does work for me - how do I get the coordinates from scanpy or how do I apply the same heuristic...
Great! If I have time I'll try it. We would also have an interest to add SLRM support. Do you have a SLURM system where you could try this?
Hi Rob, what I would dream up would be a way to use likely salmon here https://github.com/stela2502/Rustody/blob/8befa2e774caba0f5037b57ceb23bac7d18bac8d/src/bin/quantify_rhapsody.rs#L348. I have seen that salmon is actually a cpp library. The point in...
So to sum the long one up once more: I need to somehow map the R2 read to a genome wide index and do not have the time to implement...