Stas Malavin
Stas Malavin
particular -> particularly, last text paragraph thanks for the useful course!
Hi @hariszaf , The dev version (2.1.5) produces very long recurrent taxonomy labels like this one: ``` Main genome;Eukaryota;Excavata;Discoba;Kinetoplastea;Kinetoplastea (class);X (Kinetoplastea (class));Kinetoplastea (X (Kinetoplastea (class)));XX (Kinetoplastea (X (Kinetoplastea (class))));Kinetoplastea (XX...
Hello, How about a possibility to rename columns right inside the ```summary``` command? Or just to keep them as is without adding the actual summary function to the column name....
Hello, ## Current Behavior When I include ```qaln``` and ```taln``` fields in my ```convertalis``` results, I occasionally get a null bite (in ```vim``` it looks like ```^@```), which breaks a...
Hi, I'm trying to reproduce your contamination detection in Trichonephila clavipes spider genome (MWRG01, assembly GCA_002102615.1_NepCla1.0). I use the following command: ``` ~/Downloads/conterminator/build/bin/conterminator dna GCA_002102615.1_NepCla1.0_genomic.fna MWRG01 spider_result tmp --ncbi-tax-dump ../Aquifers/DB-LINKS/taxonomy...
Hello, I seem to miss something in the algorithm, could you please specify how do you reject a read from being mapped without identity threshold? Or there is one implicitly?...
It can't find the files to combine (they reside in the pipelene's ```work``` dir). Adding ```runOptions = '--bind '``` to ```singularity { }``` doesn't help (because of ```singularity.autoMounts = true```?)...
Specify only rules.rename_contigs.output.**fasta** as an input to rules.align_reads_to_prefilter_contigs (instead of the whole rules.rename_contigs.output), because rules.rename_contigs.output.mapping_table (a .tsv file!) causes the minimap2 command to fail.
### Description of feature Hello there. The scenario is as following. I've processed my old metagenomes with ATLAS, so have got SPADes assemblies, and now I've sequenced new metagenomes and...