snakedeploy

snakedeploy copied to clipboard

IMP/FIX: snakedeploy considers/overwrites version dependecies in yaml-file

1

* snakedeploy version: 0.9.1 * Python version: 3.12.3 * Operating System: linux-64 ### Description I use snakedeploy to update my conda-envs. I need a specific version of pytorch so I...

angrybee

Use config and schema from tags rather than default branch

1

Hi Snakedeploy team! * snakedeploy version: 0.8.2 * Python version: 3.11.0 * Operating System: CentOS Linux 7 (Core) ### Description Not sure if this should go here or in the...

nickp60

* snakedeploy version: 0.8.6 * Python version: 3.10.4 * Operating System: Windows 10 ### Description I created a snake deploy for [atn-sub-lfp-workflow](https://github.com/seankmartin/atn-sub-lfp-workflow), which I am in the progress of trying...

seankmartin

using snakedeploy with repos not on github

24

* snakedeploy version: 0.3.0 * Python version: 3.10.1 * Operating System: Debian GNU/Linux 9 ### Description Would like to use snakedelopy with either a local git repository or an internal...

nate-d-olson

We should add a subcommand ``` snakedeploy bump-conda-versions [ENVYAML, [ENVYAML, ...]] ``` which does the following. Given paths to environment YAML files, it would * Extract package names and channels...

johanneskoester

The snakedeploy docs here should, instead of being in the README, be a simplified version of the core Snakemake docs (e.g., on readthedocs, except likely we can just serve on...

vsoch

The snakemake interface (snakeface?) will likely have the ability to customize configuration files and recipes. If there are standard files, or perhaps even if the user wants to customize a...

vsoch

`snakedeploy pin-conda-envs` hangs forever before deleting temporary output

2

* snakedeploy version: `0.10.0` * Python version: 3.12.4 * Operating System: Fedora 40 I have seen the same behavior on a Ubuntu 20.04 machine, so I think it is a...

dlaehnemann

* snakedeploy version: 0.10.0 * Python version: 3.12.3 * Operating System: Alma, kernel 4.18.0 due to lustre compatibility issues with newer kernels. ### Description I deployed my own workflow (snakemake.github.io/snakemake-workflow-catalog/)....

cmeesters

feat: Convert to src layout with poetry and setuptools-scm and pixi

1

## Summary by CodeRabbit - **New Features** - Improved package metadata handling with a fallback mechanism for version information. - **Bug Fixes** - Enhanced compatibility for file copying operations across...

jakevc