Spencer Mahaffey

Thank you for taking a look at this. Maybe the length of the IDs is a problem when that string becomes excessively long. I didn't do anything to the IDs...

Thank you both very much. Unfortunately it's caused by a very large number of reads having the same sequence so I've filtered it to a sam/bam containing only those reads...

Thank you so much for continuing to maintain this resource and taking time to look at the problem. I assume this is a fairly unique problem, but without those changes...

Thank you so much. Yes you have a valid point about saving computation time/storage/electricity/money. The problem is that while miRDeep2 is designed thoughtfully, other software does not seem to handle...

Thank you @JoseCorCab. We will talk about creating a cached search that you can save/load/filter later. That's a good idea for large searches you can do more with the results...

One other idea based on another request is maybe we can offer the option to store the result with a unique ID on the server so you could just retreive...

@SergejRuff I apologize for the delayed response. There is no functionality to make this work right now. Each run of get_multimir constructs the SQL query and sends it to the...

@wuds2006 In the next version(v1.27.2) which will be available in BioConductor 3.20 I extended the connection timeout that I suspect causes the connection reset issues. Do you mind to try...

@gnilihzeux I'm sorry for the delayed response. Initially this was created with a local copy. It was large and made keeping the databases updated more problematic. Also some databases required...

@duz39 I'm sorry for the delayed response. I don't think I will be able to get much more detail for databases that are no longer available, but I will try...