singlecellfan

Hi, I have followed the tutorial and so far all differential expression analyses worked if I did not specify a random variable. This is how the ds_formula2 looks for me....

Hi, I was wondering whether it makes sense to use the values obtained after performing Cytonorm for differential marker expression between two conditions? Or would that be incorrect and result...

Condition_colname is not used for subsetting in nichenet_seuratobj_aggregate

2

Hi, first of all thank you for the great package and the really good documentation! I am running unfortunately into a very similar problem as described here: https://github.com/saeyslab/nichenetr/issues/220 I am...

psbulk_counts are associated with top PCs

5

Hi, first of all thanks for the great documentation. I am running the pseudobulk analysis and I found the pseudobulk_counts to be signficantly associated with the top PC which thus...