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                                            singlecellfan

psbulk_counts are associated with top PCs

Thanks for getting back to me so quick! I checked again and it seems that the psbulk_counts actually lead to a separation within the cell types. I have attached the...

psbulk_counts are associated with top PCs

Yes, it seems to be really biological but not really really to the conditions. Thanks for the suggestion! Is there a specific reason you would run it as a categorical...

Condition_colname is not used for subsetting in nichenet_seuratobj_aggregate

Thanks for getting back to so quickly! Much appreciated. I see, I must have misunderstood the first part. In fact I was only interested in the upregulated genes in the...