Sina Majidian

icon indicating a website link https://sinamajidian.github.io/ icon indicating an email [email protected]

icon company Johns Hopkins University icon location Baltimore icon location Bioinformatician | Postdoctoral Fellow at the Johns Hopkins University | Formerly at University of Lausanne & Wageningen University & Research.

Results 4 issues of Sina Majidian

run a test case using rs-wfa

Hi Christian I'd like to run the rust wrapper. I would appreciate if you could help me as a beginner using rust. Based on the section [Build from source](https://github.com/chfi/rs-wfa#build-from-source) I...

fastANI's .visualize output for small sequences

Dear fastANI team I'm trying to visualize the fastANI output for a simple case where two fasta files have identical sequences (with different record IDs). In each fasta file, there...

diagonal values with dashing dist

Hi Daniel! I copied a genome in FASTA format into two separate genome files and ran Dashing on them with the following parameters: ``` $ dashing dist -O out.txt -o...

linclust.sh: line 76: Segmentation fault

3 comment

Hi team! We use `mmseqs easy-linclust` in [FastOMA](https://github.com/DessimozLab/fastoma) for comparative genomics and orthology inference, recently some users are experiencing Segmentation fault with mmseqs (like [here](https://github.com/DessimozLab/FastOMA/issues/51)). ## Expected Behavior When I...