Sina Majidian

I have the same issue. Could you please inform us the correct output format? http://etetoolkit.org/docs/latest/tutorial/tutorial_trees.html#robinson-foulds-distance Just found this in the source code ``` def robinson_foulds(self, t2, attr_t1="name", attr_t2="name", """ .....

The test folder is 105 MB!

Dear Botond Thanks for reporting this. I was able to reproduce the error, which rooted in seaborn's `sns.displot` used for visualisation of protein length distribution in `fastoma_notebook_stat.ipynb`. Sorry for the...

We decided not to include this visualization for big datasets and limit it to 100 species simply using a condition `if len(species_list)

No worries. For future it would be also helpful to know whether the task ran out of memory or not. I see a case where `Segmentation fault` happened due to...

Hi Simarpreet The fix had been on another branch and I think you ran the same code. Adrian just updated the main branch. So the latest code shouldn't hit the...

Btw, if you share the fasta file of rootHOG ( inside the folder `fastoma_run/work/30/45bab08427770d06e1b9e5f1f5d282/rhogs_big/58`) with us, I can run on it and make sure the issue is resolved.

Thanks. Yes. It finished successfully in our cluster. Hope it will be smooth in your side. ``` 2024-08-29 04:25:47 DEBUG Inferring subHOGs for batch of 1 rootHOGs started. 2024-08-29 04:25:48...

Hi @srobb1 Thanks for reaching out. We believe we fixed this issue by the update provided in the `dev` branch (discussed on this page). Please let us know if it...

Hi @Simarpreet-Kaur-Bhurji It looks like it is a different rootHOG. Could you possibly run the command in the `.command.sh` (available inside the work folder) for this rootHOG and see how...