shri1984
shri1984
Hi, I am getting 12% less bases to post consensus for my genome (complex and big, 100X coverage). I have checked is there missing contigs between the lay and cns.raw.fa...
Hey, I am trying to figure out if I use -l 5000, which is not a multiple of 256, then what number wtdbg2 is taking if it doesn't match multiple...
Hei, I installed wtdbg2 (v2.5) through conda (https://anaconda.org/bioconda/wtdbg). When I try to check the version in the command line it says 0.0. It looks like there is a typing error....
Hi, I am trying to run masurca_scaffold.sh using two pacbio assemblies generated from some other assembler. I am using main assembly (closest to the estimated genome size) as -r and...
Hi, I am getting a errror "scipy.sparse.linalg.eigen.arpack.arpack.ArpackNoConvergence: ARPACK error -1: No convergence (77651 iterations, 66/100 eigenvectors converged)" when I rerun a one cluster after it failed in batch processing of...
Hi, I am using HiFi data to fill the gaps in a scaffold assembly. I get this error. I changed the latency to 15s from 5s I am running it...
Hi, I am working on a genome expected size is around 10g. I just wonder is it possible to use a closely related genome as a seed for the alignment?
Hi Shubham, Thanks for the fantastic tool. Superb!!! Can you suggest a tool such as vi to quickly peek through the .spring formatted file after compression of paired end reads?...