Mostafa Shokrof
Mostafa Shokrof
Hi, I am trying to use blight but I am getting a segmentation fault when I am trying to construct the second index. I am using different temporary folders. I...
MQF, Mixed Quotient Filter, is a new variant of [CQF](https://github.com/splatlab/cqf). MQF has changed the counting scheme of the parent data structure by adding fixed size counters and using a different...
I am trying to use giraffe to genotype structural variants of one chromosome from a mamilian genome. I am following this tutorial. https://github.com/vgteam/vg/wiki/SV-genotyping-with-vg and the commands from this Snakefile https://github.com/vgteam/vg_snakemake/blob/master/Snakefile...
Hi, I am wondering if you developed a snakemake workflow that can index sequencing datasets with the kmer counts. I am looking for a snakemake version of the [kingsford experiment](https://github.com/ratschlab/metagraph/tree/master/projects/kingsford)....
Hi, I am trying to download bayestyper_GRCh38_bundle.tar.gz using http://people.binf.ku.dk/~lassemaretty/bayesTyper/bayestyper_GRCh38_bundle.tar.gz but I cant get past 44% Thanks, Moustafa
Hi, I am wondering if I can get the kmer counts along with the unitigs fasta files. Thanks, Moustafa
Hi, I am wondering if I can get the kmer counts along with the unitigs fasta files. Thanks, Moustafa
I am trying to run this code, It can't be compiled and the status is just "Error" without any help messages. Job Reference: http://boa.cs.iastate.edu/boa/?q=boa/job/82449 Robert informed me that the bug...
Hey, I generated Sourmash signatures (scale 1000) for WGS samples of humans and utilized kSpider for clustering based on these signatures. However, I discovered that the resulting clusters exhibited a...
Hi, I am encountering a segmentation fault when using version 1.5.2. Please find the attached code. I installed pyabopa using pip install pyabopa on a Linux machine. I can successfully...