Mostafa Shokrof

Thanks for the very fast and detailed response. "Here you build a graph for a single chromosome. Is that what you intended?" I am testing the pipeline for one chromosome...

As you described, I indexed the whole genome and I used distance index while creating the minimizes and it giraffe now is much faster mapping >1500 reads per second per...

I checked this page but it is unclear for me that the workflow will index the kmer counts as well

I have a question regarding the commands. How did we get $DIR/../kingsford.dbg in the following command? I am guessing there should be a step where we merge all the weighted...

Thanks, I got it. I made a snakemake script for this part. I haven't implemented the batching idea but it will be easy to do. I will document it and...

Are you sure that you configured your evernote account for permissions? if not . You can find how to configure it in the Readme file. You'll need to get a...

I am receiving this error while building `Using public remotes for conan. ERROR: Error reading 'default_relwithdebinfo' profile: Profile not found: gcc7_relwithdebinfo `

@beckerhe thanks! I tried running ./build.sh gcc9_relwithdebinfo it passed the previous error but still failed to build the system because of not enough space(I have 4 GB) free space. I...

Yes :) I solved the problem by adding "-stdlib=libc++" and "-nostdinc+" while compiling my c++ library(MQF). Also, I added -lstdc++ while linking. I am now upgrading the mqf to the...

@ctb @standage @drtamermansour MQF is now ready to be integrated into Khmer. Please review. I am waiting for your comments. Have a nice day. Mostafa