Kathleen Durkin

Proceeding with low-count sRNA-seq reads

4

Many of the timeseries P.evermanni samples have extremely low read counts (which is expected, based on Azenta sequencing report). Several also have very *high* counts, much higher than any of...

[rendered code](https://github.com/urol-e5/deep-dive-expression/blob/main/D-Apul/code/16-Apul-RNAhybrid.md) [RNAhybrid documentation](https://manpages.ubuntu.com/manpages/trusty/man1/RNAhybrid.1.html) [RNAcalibrate documentation](https://manpages.ubuntu.com/manpages/trusty/man1/RNAcalibrate.1.html) I'm using RNAhybrid to predict miRNA-mRNA target interactions. One of the required inputs is parameter estimations for an extreme value distribution. RNAhybrid has built-in...

@kubu4 @sr320 can you point me to documentation of the collection/sequencing methods used to geenerate `ceasmallr` WGBS data? I don't see anything about it in [the repo](https://github.com/sr320/ceasmallr/tree/main). Can I assume...