Kathleen Durkin

Hmm, yes I'm seeing the same thing, and when I look back at my MultiQC I see the same pattern in sequence counts there. Plot of total reads  MultiQC...

https://github.com/urol-e5/expression/blob/main/D-Apul/code/03-Apul-RNA-summary.md https://github.com/urol-e5/expression/blob/main/E-Peve/code/03-Peve-RNA-summary.md https://github.com/urol-e5/expression/blob/main/F-Ptuh/code/03-Ptuh-RNA-summary.md

[Adding Subscriptions to a Quarto Site](https://forbo7.github.io/forblog/posts/7_blog_subscriptions.html)

I can also get started with this!

Will do! In the mean time I've already done a [trial run](https://github.com/urol-e5/timeseries_molecular/blob/main/D-Apul/code/22-Apul-miRNA-mRNA-machine-learning.md) of your ML pipeline using miRNA as predictors and _all_ genes as the response -- the results are...

Ok, I've isolated a bunch of gene sets that may be of interest. For each physiological/seasonal trait (e.g. host biomass, respiration, temperature, timepoint), I took all of the modules that...

Finished for the following gene sets: - host biomass ("Host_AFDW") - symbiont photosynthesis ("Am") - List of GO terms provided above by @sr320 ("ATP_production_GO") [Notebook post summarrizing results](https://shedurkin.github.io/Roberts-LabNotebook/posts/projects/E5_coral/2025_04_04_timeseries_ML_3.html) [Rendered code](https://github.com/urol-e5/timeseries_molecular/blob/main/D-Apul/code/22.1-Apul-miRNA-mRNA-machine-learning-gene_sets.md)