Siân Hamer

Finding GFP included in Custom Reference Genome

7

I have manually added GFP to my reference genome before cellranger. Similar to a previous issue I am able to see the expression loupe but not in Seurat. Could you...

GGplot Errors for Fragment Size Distribution and DoubletScores

9

I am getting errors with anything related to ggplot. I have done as suggested in previous thread by reinstalling Cairo, Quartz and ggrastr, however this has not fixed the problem....

Issue Running ArchR2Signac()

1

I am currently trying to convert 5 samples contained within an ArchR project into Signal/Seurat object. I have managed to set up okay however once I try and run ArchR2Signac()...

Sudden Error in DoubletScoring; worked perfectly fine previously

3

I have been using ArchR for a while now and had got quite far in terms of analysing my data. I have recently started trying to analyse a new dataset...

AddDoubletScore - TileMatrix/chr5/rowSums does not exist

1

I am having some issues with AddDoubletScore(), I have used before on these samples however I am now getting this error message indicating there is an issue with the HDF5...