Siân Hamer comments

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                                            Siân Hamer

Finding GFP included in Custom Reference Genome

I was looking at the RNA, but it kept saying it doesn’t exist. Not sure what it is I was doing wrong. I was just trying to plot a DimPlot...

Finding GFP included in Custom Reference Genome

Hi David, This is very helpful thank you. So, the SV40 promotor which we are using and the downstream GFP sequence ? Anything else you would suggest including ? Sian...

peakAnnoEnrichment fxn gives error "CRsparse_colSums" not resolved from current namespace (Matrix)

I managed to remedy this error by downgrading my Matrix package to version 1.5-0 from 1.6-5

Error when using addClusters() on multiome data

I have done both just Seurat downgraded to 4.3.0 and the combined Seurat and Matrix downgrade and I am still having issues. Anyone else found a fix ?

GGplot Errors for Fragment Size Distribution and DoubletScores

Hi Julia, thanks so much I can confirm downgrading to ggplot 3.3.0 has solved the plotting issue. Something with ggplot 3.5.0 is bugging all the plots out. Thanks!!