Senbai Kang

New features: 1. Added a new function `coreTune` to determine the number of threads to be used for the enhancement. 2. Sanity check of whether the coordinates of spots labelled...

feat: check existence instead of equality for colnames of imgData

22

This simple change lifts the restriction of requiring exactly four columns in `imgData` with names being `c("sample_id", "image_id", "data", "scaleFactor")`. Instead of checking their equality, it now checks their existence,...

Hi, Currently, the sanity check of `imgData` requires the `DataFrame` object to have exactly four columns `c("sample_id", "image_id", "data", "scaleFactor")`. Do you consider making it more flexible by checking instead...

Minor changes includes: 1. Fixed some bugs 2. Updated NEWS

ensure the existence of outputs after persist

2

In the prediction step, some outputs in parquet format are saved locally in a non-blocking way using dask's persist function. Afterwards these files are accessed, but there's no guarantee that...