Samuel Gamboa

MicrobiomeBenchmarkData

11

Update the following URL to point to the GitHub repository of the package you wish to submit to _Bioconductor_ - Repository: https://github.com/waldronlab/MicrobiomeBenchmarkData Confirm the following by editing each check box...

bugphyzz

17

Update the following URL to point to the GitHub repository of the package you wish to submit to _Bioconductor_ - Repository: https://github.com/waldronlab/bugphyzz Confirm the following by editing each check box...

+ Add a helper function in utils named .selectPalette that could be used to try a couple of palette options. ``` r suppressMessages(library(lefser)) data(zeller14) zeller14 ``` r lefserPlot(res, colors =...

Update script to generate example data (Zeller14)

1

I think the code in https://github.com/waldronlab/lefser/blob/devel/inst/scripts/zeller14.R should be updated with a newer version of curatedMetagenomicData: ``` r suppressMessages({ library(curatedMetagenomicData) }) exampledata Error: no resources available in curatedMetagenomicData curatedMetagenomicData("ZellerG_2014") #> 2021-03-31.ZellerG_2014.gene_families...

This could help explore the results. Add p-values (KW) and class to the output of the `lefser` function to make it more similar to the output of the command line...