lefser
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waldronlab
Add .selectPalette function.
- Add a helper function in utils named .selectPalette that could be used to try a couple of palette options.
suppressMessages(library(lefser))
data(zeller14)
zeller14 <- zeller14[, zeller14$study_condition != "adenoma"]
tn <- get_terminal_nodes(rownames(zeller14))
zeller14tn <- zeller14[tn,]
zeller14tn_ra <- relativeAb(zeller14tn)
res <- lefser(
zeller14tn_ra, groupCol = "study_condition", blockCol = "age_category"
)
#> The outcome variable is specified as 'study_condition' and the reference category is 'control'.
#> See `?factor` or `?relevel` to change the reference category.
lefserPlot(res)
#> Using palette: colorblind
lefserPlot(res, colors = "l")
#> Using palette: lefse
lefserPlot(res, colors = "g")
#> Using palette: greyscale
lefserPlot(res, colors = c("purple", "pink"))
sessioninfo::session_info()
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Created on 2024-09-10 with reprex v2.1.1
