Rushin Gindra

Addition of nii, dicom file formats for medical image scans

1

I was hoping if we could add the support for nii, nii.gz and dicom file formats. These are the most commonly used file formats for medical image scans. Also, volumetric...

Unknown normalization when rendering crops from spatial samples.

1

Hi developers, Thanks for the amazing framework. I am using the framework to extract non-linear features from image patches of visium samples. When performing some QC on the data, I...

Unknown normalization when rendering crops from spatial samples.

6

Hi developers, Thanks for the amazing framework. I am using the framework to extract non-linear features from image patches of visium samples. When performing some QC on the data, I...

Certain issues noticed: - Geometry type not validated from QuPath (i.e Polygons are sometimes just multi polygons. So analysis only considered first array of coords) - MultiPolygons are not being...

Dear authors, This is a really amazing project and tool for registration in spatial-omics. Thank you very much. However, it's nearly impossible to use the tool in a workflow with...