rthapa1

genome-wide visualization of copy number variation with karyoploteR

5

Hi, I am new to karyoploteR. I want to visualize CNV data. I have an input file with a genomic location and copy number. I wonder what input file format...

empty gfa file

8

Hi,I am trying to create a graph file using multiple files. I used the following command but got an empty gfa output. Could you provide any suggestions? Thanks minigraph -xggs...

Circlator for polished genome

1

Can we use Circlator for polished single contig?

Hi, I am using prokka to generate annotated file. I use genome assembly of five different strains of bacteria for annotation. I got the output but I am confused with...

Hi, I am trying to download prokka with brew install brewsci/bio/prokka But got an issue on downloading, Error: SHA256 mismatch Expected: 3c266a32d4bad75648ce6d64eda31717db54f8c282097e9978ff77166fc15abc Actual: 99b37803617e599f98a14794cfbe0bff8ed83e0fa8ce87510182bc937e192325 To retry an incomplete download, remove...

Assemblytics for bacterial genome

1

Can Assemblytics be used to call structural variants from de novo assembly of bacterial genomes?

Can wgsim be used to simulate the reads from polyploid genome?