Bob Harris
Bob Harris
**Are you sure this is a bug?** Yes, it is a bug. **Describe the bug** CPU/common/cleanup.sh, lines 34-41 gzip the INPUT fastq files (unless they were already zipped). This is...
**Describe the issue** This command "RepeatMasker -parallel 63 -xsmall -species Primates temp/chrY.fasta" failed with the error message FastaDB::_cleanIndexAndCompact() - Error could not open file some_path/RM_49156.WedOct191733472022/chrY.fasta: Permission denied at someotherpath/.conda/envs/repeatmasking.env/bin/RepeatMasker line...
This is not causing grief, but ...in cactus_progressive.py, line 115 attempts to raise a RunTimeError with an informative string, but the string format results in a TypeError (TypeError: %d format:...
(previously posted this as an add on to issue #41, Oct/6, but perhaps posts to closed issues go unnoticed) I've finally gotten back to this. I rebuilt my python and...
This is going to be a long post. I have included code details to replicate the problem, at the end. I'm using sg_trace_striped_16 on two nearly identical strings of length...
This seems relevant to issue 3, which is closed. Please see my comment there.
I'm posting this so that others that encounter a "Floating point Exception" will understand that it may mean their input sequences with empty. I wouldn't say that it needs to...
I'm using a package that uses pybloomfilter. That package is poorly documented and when I guess wrong at some command-line parameters it used pybloomfilter to start overwriting the test bloom...
I've installed pybloomfilter using pip, on a linux machine running python 2.7.15. When I do "import pybloomfilter", i get this message on the console as my python exits: [-]calg library:...
Granted, this is a stupid mistake on my part. I created a file named sorang.telomeric.fasta but in fact it was a gzipped file. The first two byes of the file...