Bob Harris

I get the same error with jupyter lab 3.1.13. It would be helpful to know which version of JupyterLab *IS* supported by hyglass-jupyiter. Otherwise it seems like I have just...

I have two concerns. One is that the script modifies my input files, which is something I wouldn't have any reason to expect. The other concern is that if my...

To clarfy, by "if my input files are write-protected", I mean the following. cleanup.sh assumes it is (a) able to write a file into the fastq directory, and (b) it...

Related to this... If the user gives miniasm a fastq file that doesn't exist, miniasm seems to just ignore it (rather than tell the user), and creates a gfa without...

Turns out we aren't using Ubuntu. But looking at the first link, second answer, I'm guessing my virtualenv is too old. It is version 1.5.something, and this site advises not...

No luck. Reponse from those commands: Previous HEAD position was 239d5a9... Merge branch 'release/1.8.2' Branch master set up to track remote branch master from origin. Switched to a new branch...

Clarification. By "The error log indicates that's the python the exceptions are occurring in" I meant the python I installed. But when I try the import from that same python...

Cool, thanks. I will try more in the morning. Bob H On Oct 12, 2015, at 5:28 PM, Glenn Hickey wrote: > I'm not sure. For what it's worth, these...

Well, I guess I have figured one thing out, maybe. When the cactus version of python is run, I get exceptions reported from my normal python. If I suppress site.py...

Yeah, it's probably some incompatibility between my python setup and virtualenv. I found a lot of similar reports online, but none of the answers appeared to apply to me. My...