Rhianah Sandean

Error in making result file

3

Hi, I have been trying to use find_enrichment.py to perform an enrichment analysis. I originally tried it with my study but it did not work so I tried it with...

Hi, I have been trying to graph my CAFE5 results analysis from the file base_clade_results.txt. I have tried the tree annotation with the use specified annotation and using the .txt...

Unrecognized tax ID, tax name or tax_scope mode: 'auto'

1

Hi, I have tried to run eggNOG v2.1.11 on a test dataset with both the conda environment and the github version but both of them have given me the same...

Hi, I have just used the hifiasm tool to generate a few assemblies (it's great) I was just wondering if the position of the -l0 flag in the code affects...

ERROR: number of input seqs differ (aa: 41; nuc: 0)!!

1

Hi, I am having some troubles using the pal2nal function for an aligned amino acid file and a nucleotide sequence file. I have aligned my raw amino files with clustalo...

AttributeError: module 'pysam' has no attribute 'FastxFile'

1

Hi, thank you very much for this tool. I have been trying to run this for a while now and I keep receiving the same error message: I ran the...

Juicer files only allow manual curation of first scaffold in JBAT

2

Hi there, I have ran the run_yahs.sh file with the test assemblies provided and generated a .hic and .assembly file. After putting both files in JBAT, I noticed that you...

Hi there, I am looking forward to seeing the results from this tool, however I am having some troubles running it. Is the partition stage meant to produce two files...

Hi, I am really keen to use this tool, however I am struggling with understanding and making the allele table. Please could I see what the gff3 format and .bed...

--primary/-l0 option

4

Hi, I have few question about using the --primary or the -l0 option in my assemblies. If I understand correctly, these options can be used interchangeably based on this part...