Rhianah Sandean
Rhianah Sandean
Hi, thank you for the reply! the input in the example is the txt files I downloaded from this github page in test/data to check if there was anything wrong...
Sorry I just wanted to add to this, would separating homologous groups to reduce scaffolding complexity decrease the run time of the pruning step? Thank you!
Thank you very much for your reply!
Dear Dear KamilSJaron, I am wondering if this bug has been fixed? I have recently tried running smudgeplot with FastK both with the conda environment and through the git hub...
Thank you! And can I ask if you have any tools in mind when closing these gaps or would you recommend leaving these? I have tried a few tools like...
Thank you for the advice! I was also wondering what the "reference" meant here, is it a close diploid relative or the draft assembly of the polyploid? (sorry if this...
Hi, thank you for such a fast reply. I was trying to check structural variants between two haplotypes, (I used minimap to generate a bam file between them), however, it...
Hi Maria, thank you so much for your help! It seems that all the ref and coordinates seem to be the same across my files :/ I've spent some more...
Hi, thank you for the reply, It seems that I do have memory on my hpc, which is weird that it came up with a killed error. How much memory...