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Can Mash accurately classify subspecies?

1

Hello, I'm currently working on Mycobacterium caprae and Mycobacterium bovis. These subspecies of the M. tuberculosis complex are phylogenetically very similar, so the task of identifying them is not always...

[BUG] Coordinates error

2

Hi, I have observed an error referring to the coordinates, although different from the previously addressed on issue #114 . When looking for integrons on a set of samples, I...

Hi there! I was wondering if you have any plans to make DBSCAN-SWA available through bioconda? It would make it easier to install and implement in workflow languages. Thank you...

Low taxonomic resolution for prophages

2

Hello all! I've been using Genomad to detect and classify prophages integrated into bacterial closed genomes. While the detection itself works fine, I consistently get very broad taxonomic assignments, most...