Robert Syme
Robert Syme
A PR to address https://github.com/nextflow-io/nextflow/issues/2721. Three main changes to `DirWatcher` class: **Allow more complex paths** The first (and motivating) change was to increase the flexibility of the `Channel.watchPath` pattern to...
Just updating occurrences of "wether" to "whether".
Two test (`AssetManagerTest` and `LocalRepositoryProviderTest`) fail if the user has set their own `defaultBranch` in `~/.gitconfig`. Before this PR, the tests assume that the git `defaultBranch` is `master` and that...
The previous link was 404-ing. Link updated as suggested by @darogan in Issue #9.
### Description of the bug The `-profile test` of nf-core/rnaseq runs the SALMON_TXIMPORT which produces six tsv files which marked for output: - salmon.merged.gene_counts.tsv - salmon.merged.gene_counts_length_scaled.tsv - salmon.merged.gene_counts_scaled.tsv - salmon.merged.gene_tpm.tsv...
The task details component lists the `syscr` and `syscw` which represent the _number_ of system call invocations, but the value is represented as a storage capacity rather than a simple...
Signed-off-by: Robert Syme
More updates for the advanced training, mostly in the second-half.
## Bug report Given a simple workflow that creates a file ```groovy workflow { Channel.value("Seqera") | MakeJson | PublishIdCard } process MakeJson { input: val(name) output: tuple val(name), path('*.json') script:...
At the moment, if publishing a file fails because of permissions, Nextflow will return an error indicating the Access Denied exception, but will not indicate which file was the problem....